Papers

List of publications related to GenoCAD

A syntactic model to design and verify synthetic genetic constructs derived from standard biological parts
Authors: Cai Y, Hartnett B, Gustafsson C, Peccoud J. Source: Bioinformatics 23(20): 2760-2767 Year: 2007 Go to paper Abstract ...
Sat, 11 Jul, 2015 at 12:20 AM
Targeted development of registries of biological parts
Authors: Peccoud J, Blauvelt MF, Cai Y, Cooper KL, Crasta O, DeLalla EC, Evans C, Folkerts O, Lyons BM, Mane SP, Shelton R, Sweede MA, Waldon SA Source: ...
Sat, 11 Jul, 2015 at 12:36 AM
Modeling structure-function relationships in synthetic DNA sequences using attribute grammars
Authors: Cai Y, Lux MW, Adam L, Peccoud J Source: PLoS Comput Biol 5(10):e1000529 Year: 2009 Go to paper Abstract Recognizing tha...
Sat, 11 Jul, 2015 at 12:41 AM
Co-design in synthetic biology, a system-level analysis of the development of an environmental sensing device.
Authors: Ball DA, Lux MW, Graef RR, Peterson MW, Valenti JD, Dileo J, Peccoud J Source: Pac.Symp.Biocomput. 385-96. Year: 2010 Go to paper ...
Sat, 11 Jul, 2015 at 12:45 AM
GenoCAD for iGEM: a grammatical approach to the design of standard-compliant constructs
Authors: Cai Y, Wilson ML, Peccoud J Source: Nucleic Acids Research 38, 2637-2644. Year: 2010 Go to paper Abstract One of the foun...
Sat, 11 Jul, 2015 at 12:48 AM
A step-by-step introduction to rule-based design of synthetic genetic constructs using GenoCAD
Authors: Wilson ML, Hertzberg R, Adam L, Peccoud J Source: Methods in Enzymology 498:173-88. Year: 2011 Go to paper Abstract GenoC...
Sat, 11 Jul, 2015 at 12:55 AM
Genetic design automation: engineering fantasy or scientific renewal?
Authors: Lux MW, Bramlett BW, Ball DA, Peccoud J Source: Trends in Biotechnology 30:120-126. Year: 2012 Go to paper Abstract The ...
Sat, 11 Jul, 2015 at 1:30 AM
Development of a domain-specific genetic language to design Chlamydomonas reinhardtii expression vectors
Authors: Wilson ML, Okumoto S, Adam L, Peccoud J Source: Bioinformatics. doi:10.1093/bioinformatics/btt646 Year: 2013 Go to paper Abstr...
Sat, 11 Jul, 2015 at 1:27 AM
Rule-Based Design of Synthetic Transcription Factors in Eukaryotes
Authors: Purcell O, Peccoud J, Lu TK Source: ACS Synthetic Biology 3 (10): 737–744 Year: 2013 Go to paper Abstract To de...
Sat, 11 Jul, 2015 at 1:21 AM
GenoLIB: a database of biological parts derived from a library of common plasmid features
Authors: Adames NR, Wilson ML, Fang G, Lux MW, Glick BS, Peccoud J Source: Nucleic Acids Research Year: 2015 Go to paper Abstrac...
Sat, 11 Jul, 2015 at 1:17 AM